Click here for a PubMed listing of all Amacher publications in MyBibliography.
Blatnik MC, Gallagher TL, Amacher SL (2023) Keeping development on time: Insights into post-transcriptional mechanisms driving oscillatory gene expression during vertebrate segmentation. Wiley Interdiscip Rev RNA 14, e1751.
Hsu JY, Danis EP, Nance S, O'Brien JH, Gustafson AL, Wessells VM, Goodspeed AE, Talbot JC, Amacher SL, Jedlicka P, Black JC, Costello JC, Durbin AD, Artinger KB, Ford HL (2022) SIX1 reprograms myogenic transcription factors to maintain the rhabdomyosarcoma undifferentiated state. Cell Rep 38, 110323.
Chong JX, Talbot JC, Teets EM, Previs S, Martin BL, Shively KM, Marvin CT, Aylsworth AS, Saadeh-Haddad R, Schatz UA, Inzana F, Ben-Omran T, Almusafri F, Al-Mulla M, Buckingham KJ, Harel T, Mor-Shaked H, Radhakrishnan P, Girisha KM, Nayak SS, Shukla A, Dieterich K, Faure J, Rendu J, Capri Y, Latypova X, Nickerson DA, Warshaw DM, Janssen PML; University of Washington Center for Mendelian Genomics, Amacher SL, Bamshad MJ (2020) Mutations in MYLPF Cause a Novel Segmental Amyoplasia that Manifests as Distal Arthrogryposis. Am J Hum Genet 107, 293-310.
Gangras P, Gallagher TL, Parthun MA, Yi Z, Patton RD, Tietz KT, Deans NC, Bundschuh R, Amacher SL, Singh G (2020) Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3'UTR intron-containing NMD targets. PLoS Genet 16, e1008830.
Tietz KT*, Gallagher TL*, Mannings MC, Morrow ZT, Derr NL, Amacher SL (2020) Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts. Dev Biol 462, :129-140. *equal contributions
Hromowyk KJ*, Talbot JC*, Martin BL, Janssen PML, Amacher SL (2020) Cell fusion is differentially regulated in zebrafish post-embryonic slow and fast muscle. Dev Biol 462, 85-100. *equal contributions
Talbot JC, Teets EM, Ratnayake D, Duy PQ, Currie PD, Amacher SL (2019) Muscle precursor cell movements in zebrafish are dynamic and require Six family genes. Development, 146:10.
Stainier DYR, Raz E, Lawson ND, Ekker SC, Burdine RD, Eisen JS, Ingham PW, Schulte-Merker S, Yelon D, Weinstein BM, Mullins MC, Wilson SW, Ramakrishnan L, Amacher SL, Neuhauss SCF, Meng A, Mochizuki N, Panula P, Moens CB (2017) Guidelines for morpholino use in zebrafish. PLoS Genet 13, e1007000.
Morrow ZT*, Maxwell AM*, Hoshijima K, Talbot JC, Grunwald DJ, Amacher SL (2017) tbx6l and tbx16 are redundantly required for posterior paraxial mesoderm formation during zebrafish embryogenesis. Dev Dyn 246, 759-769. *equal contributions
Gallagher TL*, Tietz KT*, Morrow ZT, McCammon JM, Goldrich ML, Derr NL, Amacher SL (2017) Pnrc2 regulates 3'UTR-mediated decay of segmentation clock-associated transcripts during zebrafish segmentation. Dev Biol 429, 225-239. *equal contributions
Berberoglu MA, Gallagher TL, Morrow ZT, Talbot JC, Hromowyk KJ, Tenente IM, Langenau DM, Amacher SL (2017) Satellite-like cells contribute to pax7-dependent skeletal muscle repair in adult zebrafish. Dev Biol 424, 162-180.
Li M, Hromowyk KJ, Amacher SL, Currie PD (2017) Muscular dystrophy modeling in zebrafish. Methods Cell Biol 138, 347-380.
Talbot JC, Nichols JT, Yan YL, Leonard IF, BreMiller RA, Amacher SL, Postlethwait JH, Kimmel CB (2016) Pharyngeal morphogenesis requires fras1-itga8-dependent epithelial-mesenchymal interaction. Dev Biol 416, 136-148.
Nissim S, Weeks O, Talbot JC, Hedgepeth JW, Wucherpfennig J, Schatzman-Bone S, Swinburne I, Cortes M, Alexa K, Megason S, North TE, Amacher SL, Goessling W (2016) Iterative use of nuclear receptor Nr5a2 regulates multiple stages of liver and pancreas development. Dev Biol 418, 108-23.
Martin BL, Gallagher TL, Rastogi N, Davis JP, Beattie CB, Amacher SL, Janssen PM (2015) In vivo assessment of contractile strength distinguishes differential gene function in skeletal muscle of zebrafish larvae. J Appl Physiol 119, 799-806.
Shih NP, François P, Delaune EA, Amacher SL (2015) Dynamics of the slowing segmentation clock reveal alternating two-segment periodicity. Development 142, 1785-1793.
Talbot JC, Amacher SL (2014) A streamlined CRISPR pipeline to reliably generate zebrafish frameshifting alleles. Zebrafish 11, 583-585. Supplement.
Beahm BJ, Dehnert KW, Derr NL, Kuhn J, Eberhart JK, Spillmann D, Amacher SL, Bertozzi CR (2014) A visualizable chain-terminating inhibitor of glycosaminoglycan biosynthesis in developing zebrafish. Angew Chem Int Ed Engl 53, 3347-3352.
Delaune EA, François P, Shih NP, Amacher SL (2013) [A technical breakthrough for understanding segmentation clock dynamics and synchrony]. Med Sci (Paris) 29, 355-358.
Delaune EA, François P, Shih NP, Amacher SL (2012) Single-cell-resolution imaging of the impact of Notch signaling and mitosis on segmentation clock dynamics. Dev Cell 23, 995-1005.
Fior R, Maxwell AA, Ma TP, Vezzaro A, Moens CB, Amacher SL, Lewis J, Saúde L (2012) The differentiation and movement of presomitic mesoderm progenitor cells are controlled by Mesogenin 1. Development 139, 4656-4665.
Dehnert KW, Baskin JM, Laughlin ST, Beahm BJ, Naidu NN, Amacher SL, Bertozzi CR (2012) Imaging the sialome during zebrafish development with copper-free click chemistry. Chembiochem 13, 353-357.
Parra MK, Gallagher TL, Amacher SL, Mohandas N, Conboy JG (2012) Deep intron elements mediate nested splicing events at consecutive AG-dinucleotides to regulate alternative 3' splice site choice in vertebrate 4.1 genes. Mol Cell Biol 32, 2044-2053.
Dehnert KW, Beahm BJ, Huynh TT, Baskin JM, Laughlin ST, Wang W, Wu P, Amacher SL, Bertozzi CR (2011) Metabolic labeling of fucosylated glycans in developing zebrafish. ACS Chem Biol 6, 547-552.
Gallagher TL, Arribere JA, Geurts PA, Exner CR, McDonald KL, Dill KK, Marr HL, Adkar SS, Garnett AT, Amacher SL, Conboy JG (2011) Rbfox-regulated alternative splicing is critical for zebrafish cardiac and skeletal muscle functions. Dev. Biol. 359, 251-261.
McCammon JM, Doyon Y, Amacher SL (2011) Inducing high rates of targeted mutagenesis in zebrafish using zinc finger nucleases (ZFNs). Methods Mol Biol 770, 505-527.
Baskin JM, Dehnert KW, Laughlin ST, Amacher SL, Bertozzi CR (2010) Visualizing enveloping layer glycans during zebrafish early embryogenesis. Proc Natl Acad Sci USA 107, 10360-10365.
McCammon JM, Amacher SL (2010) Using zinc finger nucleases for efficient and heritable gene disruption in zebrafish. Methods Mol Biol 649, 281-298.
Garnett AT, Han TM, Gilchrist MJ, Smith JC, Eisen MB, Wardle FC, Amacher SL (2009) Identification of direct T-box target genes in the developing zebrafish mesoderm. Development 136, 749-760.
Amacher SL (2008) Emerging gene knockout technology in zebrafish: zinc-finger nucleases. Brief Funct Genomic Proteomic 7, 460-464.
Doyon Y, McCammon JM, Miller JC, Faraji F, Ngo C, Katibah GE, Amora R, Hocking TD, Zhang L, Rebar EJ, Gregory PD, Urnov FD, Amacher SL (2008) Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases. Nat Biotechnol 26, 702-708.
Laughlin ST, Baskin JM, Amacher SL, Bertozzi CR (2008) In vivo imaging of membrane-associated glycans in developing zebrafish. Science 320, 664-667.
Ouyang M, Garnett AT, Han TM, Hama K, Lee A, Deng Y, Lee N, Liu HY, Amacher SL, Farber SA, Ho SY (2008) A web based resource characterizing the zebrafish developmental profile of over 16,000 transcripts. Gene Expr Patterns 8, 171-180.
Daggett DF, Domingo CR, Currie PD, Amacher SL (2007) Control of morphogenetic cell movements in the early zebrafish myotome. Dev Biol 309, 169-179.
Dill KK, Amacher SL (2005) tortuga refines Notch pathway gene expression in the zebrafish presomitic mesoderm at the post-transcriptional level. Dev Biol 287, 225-236.
Henry CA, McNulty IM, Durst WA, Munchel SE, Amacher SL (2005) Interactions between muscle fibers and segment boundaries in zebrafish. Dev Biol 287, 346-360.
Daggett DF, Boyd CA, Gautier P, Bryson-Richardson RJ, Thisse C, Thisse B, Amacher SL, Currie PD (2004) Developmentally restricted actin-regulatory molecules control morphogenetic cell movements in the zebrafish gastrula. Curr Biol 14, 632-638.
Henry CA, Amacher SL (2004) Zebrafish slow muscle cell migration induces a wave of fast muscle morphogenesis. Dev Cell 7, 917-923.
Brennan C, Amacher SL, Currie PD (2002) Somitogenesis. Results Probl Cell Diff 40, 271-297.
Henry CA, Urban MK, Dill KK, Merlie JP, Page MF, Kimmel CB, Amacher SL (2002) Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries. Development 129, 3693-3704.
Amacher SL, Draper BW, Summers BR, Kimmel CB (2002) The zebrafish T-box genes no tail and spadetail are required for development of trunk and tail mesoderm and medial floor plate. Development 129, 3311-3323.
Gray M, Moens CB, Amacher SL, Eisen JS, Beattie CE (2001) Zebrafish deadly seven functions in neurogenesis. Dev Biol 237, 306-323.
Amacher SL (1999) Transcriptional regulation during zebrafish embryogenesis. Curr Opin Genet Dev 9, 548-552.
Amacher SL, Kimmel CB (1998) Promoting notochord fate and repressing muscle development in zebrafish axial mesoderm. Development 125, 1397-1406.
Griffin KJP, Amacher SL, Kimmel CB, Kimelman D (1998) Molecular identification of spadetail: regulation of zebrafish trunk and tail mesoderm formation by T-box genes. Development 125, 3379-3388.
Yamamoto A, Amacher SL, Kim S-H, Geissert D, Kimmel CB, De Robertis EM (1998) Zebrafish paraxial protocadherin is a downstream target of spadetail involved in morphogenesis of gastrula mesoderm. Development 125, 3389-3397.
Fisher S, Amacher SL, Halpern ME (1997) Loss of cerebum function ventralizes the zebrafish embryo. Development 124, 1301-1311.
Halpern ME, Hatta K, Amacher SL, Talbot WS, Yan Y-L, Thisse B, Thisse C, Postlethwait JH, Kimmel CB (1997) Genetic interactions in zebrafish midline development. Dev Biol 187, 154-170.